College of Agricultural Sciences

J. C. Chiu, Jiang, X., Zhao, L., Hamm, C. A., Cridland, J. M., Saelao, P., Hamby, K. A., Lee, E. K., Kwok, R. S., Zhang, G., Zalom, F. G., Walton, V. M., and Begun, D. J., “Genome of Drosophila suzukii , the Spotted Wing Drosophila”, G3 Genes|Genomes|Genetics, vol. 3, no. 12, pp. 2257 - 2271, 2013.

D. Armisén, Rajakumar, R., Friedrich, M., Benoit, J. B., Robertson, H. M., Panfilio, K. A., Ahn, S. - J., Poelchau, M. F., Chao, H., Dinh, H., and al., et, “The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water”, BMC Genomics, vol. 19, no. 1, 2018.

K. E. Bushley, Raja, R., Jaiswal, P., Cumbie, J. S., Nonogaki, M., Boyd, A. E., C Owensby, A., Knaus, B. J., Elser, J., Miller, D., Di, Y., McPhail, K. L., and Spatafora, J. W., “The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster”, PLOS Genetics, vol. 9, 2013.

V. Shulaev, Sargent, D. J., Crowhurst, R. N., Mockler, T. C., Folkerts, O., Delcher, A. L., Jaiswal, P., Mockaitis, K., Liston, A., Mane, S. P., Burns, P., Davis, T. M., Slovin, J. P., Bassil, N., Hellens, R. P., Evans, C., Harkins, T., Kodira, C., Desany, B., Crasta, O. R., Jensen, R. V., Allan, A. C., Michael, T. P., Setubal, J. Carlos, Celton, J. - M., D Rees, J. G., Williams, K. P., Holt, S. H., Rojas, J. Jairo Ruiz, Chatterjee, M., Liu, B., Silva, H., Meisel, L., Adato, A., Filichkin, S. A., Troggio, M., Viola, R., Ashman, T. - L., Wang, H., Dharmawardhana, P., Elser, J., Raja, R., Priest, H. D., Bryant, D. W., Fox, S. E., Givan, S. A., Wilhelm, L. J., Naithani, S., Christoffels, A., Salama, D. Y., Carter, J., Girona, E. Lopez, Zdepski, A., Wang, W., Kerstetter, R. A., Schwab, W., Korban, S. S., Davik, J., Monfort, A., Denoyes-Rothan, B., Arus, P., Mittler, R., Flinn, B., Aharoni, A., Bennetzen, J. L., Salzberg, S. L., Dickerman, A. W., Velasco, R., Borodovsky, M., Veilleux, R. E., and Folta, K. M., “The genome of woodland strawberry(Fragaria vesca).”, Nature genetics, vol. 43, pp. 109-16, 2011.

G. T. Slavov, DiFazio, S. P., Martin, J., Schackwitz, W., Muchero, W., Rodgers-Melnick, E., Lipphardt, M. F., Pennacchio, C. P., Hellsten, U., Pennacchio, L. A., Gunter, L. E., Ranjan, P., Vining, K. J., Pomraning, K. R., Wilhelm, L. J., Pellegrini, M., Mockler, T. C., Freitag, M., Geraldes, A., El-Kassaby, Y. A., Mansfield, S. D., Cronk, Q. C. B., Douglas, C. J., Strauss, S. H., Rokhsar, D., and Tuskan, G. A., “Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa”, New Phytologist, vol. 19, no. 3, pp. 713 - 725, 2012.

P. Dharmawardhana, Ren, L., Amarasinghe, V., Monaco, M., Thomason, J., Ravenscroft, D., McCouch, S., Ware, D., and Jaiswal, P., “A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress”, Rice, vol. 6, 2013.

A. Juneja, Chaplen, F., and Murthy, G. Suryanaray, “Genome scale metabolic reconstruction of Chlorella variabilis for exploring its metabolic potential for biofuels.”, Bioresource Technology, vol. 213, pp. 103-10, 2016.

A. Juneja, Chaplen, F. W. R., and Murthy, G. S., “Genome scale metabolic reconstruction of Chlorella variabilis for exploring its metabolic potential for biofuels”, Bioresource technology, 2016.

X. Feng, Poplawsky, A. R., Nikolaeva, O. V., Myers, J. R., and Karasev, A. V., “Genome sequences of two field isolates of Bean common mosaic virus”, in PHYTOPATHOLOGY, 2012.

X. Feng, Poplawsky, A. R., Nikolaeva, O. V., Myers, J. R., and Karasev, A. V., “Genome sequences of two field isolates of Bean common mosaic virus”, Phytopathology, vol. 102, no. 6, p. S6.9, 2012.

Yping Chen, Pettis, J. S., Zhao, Y., Liu, X., Tallon, L. J., Sadzewicz, L. D., Li, R., Zheng, H., Huang, S., Zhang, X., Hamilton, M. C., Pernal, S. F., Melathopoulos, A. P., Yan, X., and Evans, J. D., “Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions”, BMC Genomics, vol. 14, no. 1, p. 451, 2013.

Y. P. Chen, Pettis, J. S., Zhao, Y., Liu, X., Tallon, L. J., Sadzewicz, L. D., Li, R., Zheng, H., Huang, S., Zhang, X., Hamilton, M. C., Pernal, S. F., Melathopoulos, A. P., Yan, X., and Evans, J. D., “Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions”, BMC Genomics, vol. 14, p. 451, 2013.

R. Contreras and Ruter, J., “Genome Size Estimates and Chromosome Numbers of Callicarpa L. (Lamiaceae)”, HortScience, vol. 46, no. 4, 2011.

J. J. Rothleutner and Contreras, R., “Genome size estimates for Cotoneaster spp.”. 2011.

S. Gouthu, Di, Y., P, J., P, J., and Deluc, L. G., “Genome -wide arrays at the onset of grape berry ripening reveals a coordinated hormone-regulated transcriptional network.”, 2012.

M. Mohammadi, Blake, T. K., Budde, A. D., Chao, S., Hayes, P. M., Horsley, R. D., Obert, D. E., Ullrich, S. E., and Smith, K. P., “A genome-wide association study of malting quality across eight U.S. barley breeding programs”, Theoretical and Applied Genetics, vol. 128, no. 4, pp. 705 - 721, 2015.

J. Chen, Chu, C., Souza, E. J., Guttieri, M. J., Chen, X., Xu, S., Hole, D. J., and Zemetra, R. S., “Genome-wide identification of QTL conferring high-temperature adult-plant (HTAP) resistance to stripe rust (Puccinia striiformis f. sp. tritici) in wheat”, Molecular Breeding, vol. 29, no. 326, pp. 791 - 800, 2012.

C. D. Curtin and Pretorius, I. S., “Genomic insights into the evolution of industrial yeast species Brettanomyces bruxellensis.”, FEMS Yeast Res, vol. 14, no. 7, pp. 997-1005, 2014.

M. M. Mathey, Mookerjee, S., Mahoney, L. L., ündüz, K., Rosyara, U., Hancock, J. F., Stewart, P. J., Whitaker, V. M., Bassil, N. V., Davis, T. M., and Finn, C. E., “Genotype by environment interactions and combining ability for strawberry families grown in diverse environments”, Euphytica, vol. 213708697186859242471367344438515912733, no. 5, 2017.

C. M. Bradish, Bushakra, J. M., Dossett, M., Bassil, N. V., Finn, C. E., and Fernandez, G. E., “Genotyping and phenotyping heat tolerance in black raspberry ( Rubus occidentalis L.)”, Acta Horticulturae, no. 1127, pp. 321 - 324, 2016.

J. A. Henning, Gent, D. H., Twomey, M. C., Townsend, M. S., Pitra, N. J., and Matthews, P. D., “Genotyping-by-sequencing of a bi-parental mapping population segregating for downy mildew resistance in hop (Humulus lupulus L.)”, Euphytica, vol. 20, no. 32, pp. 545 - 559, 2016.

R. A. Lybrand, Michalski, G., Graham, R. C., and Parker, D. R., “The geochemical associations of nitrate and naturally formed perchlorate in the Mojave Desert, California, USA”, Geochimica et Cosmochimica Acta, vol. 104, pp. 136-147, 2013.

S. A. Mehlenbacher, “Geographic distribution of incompatibility alleles in cultivars and selections of European hazelnut”, J. Amer. Soc. Hort. Sci., vol. 139, pp. 191-200, 2014.

C. W. Higgins, “Geometric alignments in atmospheric boundary layer turbulence and large eddy simulations”, 2007.

C. W. Higgins, Meneveau, C., and Parlange, M. B., “Geometric Alignments of the SGS Force in the Atmospheric Surface Layer”, in 17th Symposium on Boundary Layers and Turbulence, 2006.