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M. Geniza and Jaiswal, P., Tools for building de novo transcriptome assembly, Current Plant Biology, vol. 11-12, pp. 41 - 45, 2017.
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L. Cooper, Meier, A., Laporte, M. - A., Elser, J. L., Mungall, C., Sinn, B. T., Cavaliere, D., Carbon, S., Dunn, N. A., Smith, B., Qu, B., Preece, J., Zhang, E., Todorovic, S., Gkoutos, G., Doonan, J. H., Stevenson, D. W., Arnaud, E., and Jaiswal, P., The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics., Nucleic acids research, vol. 46, pp. D1168-D1180, 2018.
K. Ilic, Kellogg, E. A., Jaiswal, P., Zapata, F., Stevens, P. F., Vincent, L. P., Avraham, S., Reiser, L., Pujar, A., Sachs, M. M., Whitman, N. T., McCouch, S. R., Schaeffer, M. L., Ware, D. H., Stein, L. D., and Rhee, S. Y., The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant., Plant physiology, vol. 143, pp. 587-99, 2007.
S. Naithani, Preece, J., D’Eustachio, P., Gupta, P., Amarasinghe, V., Dharmawardhana, P. D., Wu, G., Fabregat, A., Elser, J. L., Weiser, J., Keays, M., Fuentes, A. Munoz- Pome, Petryszak, R., Stein, L. D., Ware, D., and Jaiswal, P., Plant Reactome: a resource for plant pathways and comparative analysis., Nucleic acids research, vol. 45, pp. D1029-D1039, 2018.
P. Jaiswal and Usadel, B., Plant Pathway Databases., in Methods in molecular biology (Clifton, N.J.), vol. 1374, 2016, pp. 71-87.
P. Jaiswal, Avraham, S., Ilic, K., Kellogg, E. A., McCouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Stevens, P., Vincent, L., Ware, D., and Zapata, F., Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages., Comparative and functional genomics, vol. 6, pp. 388-97, 2005.
R. L. Walls, Cooper, L., Elser, J., Gandolfo, M. Alejandra, Mungall, C. J., Smith, B., Stevenson, D. W., and Jaiswal, P., The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species., Frontiers in plant science, vol. 10, p. 631, 2019.
S. Avraham, Tung, C. - W., Ilic, K., Jaiswal, P., Kellogg, E. A., McCouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Stevens, P., Vincent, L., Zapata, F., and Ware, D., The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations., Nucleic acids research, vol. 36, pp. D449-54, 2008.
L. Cooper, Walls, R. L., Elser, J., Gandolfo, M. A., Stevenson, D. W., Smith, B., Preece, J., Athreya, B., Mungall, C. J., Rensing, S., Hiss, M., Lang, D., Reski, R., Berardini, T. Z., Li, D., Huala, E., Schaeffer, M., Menda, N., Arnaud, E., Shrestha, R., Yamazaki, Y., and Jaiswal, P., The Plant Ontology As A Tool For Comparative Plant Anatomy And Genomic Analyses., Plant & Cell Physiology, 2012.
L. Cooper and Jaiswal, P., The Plant Ontology: A Tool for Plant Genomics., in Methods in molecular biology (Clifton, N.J.), vol. 1374, 2016, pp. 89-114.
S. Naithani and Jaiswal, P., Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study., Methods in molecular biology (Clifton, N.J.), vol. 1533, pp. 241-256, 2017.

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