College of Agricultural Sciences

M. Geniza and Jaiswal, P., “Tools for building de novo transcriptome assembly”, Current Plant Biology, vol. 11-12, pp. 41 - 45, 2017.

G. R. Garcia, Noyes, P. D., and Tanguay, R. L., “Advancements in zebrafish applications for 21st century toxicology.”, Pharmacol Ther, vol. 161, pp. 11-21, 2016.

P. Garg and Jaiswal, P., “Databases and bioinformatics tools for rice research”, Current Plant Biology, vol. 7-8, pp. 39 - 52, 2016.

S. Davoodi, Cooke, R. F., Fernandes, A. C. C., Cappellozza, B. Ieda, Vasconcelos, J. L. M., and Cerri, R. L. A., “Expression of estrus modifies the gene expression profile in reproductive tissues on Day 19 of gestation in beef cows”, Theriogenology, vol. 85, no. 4, pp. 645 - 655, 2016.

R. S. Cipriano, Cooke, R. F., Rodrigues, A. D., Silva, L. G. T., Bohnert, D. W., Marques, R. S., Vasconcelos, J. L. M., Pires, A. V., and Cerri, R. L. A., “Post–Artificial Insemination Supplementation with Calcium Salts of Soybean Oil Influences Pregnancy Establishment Factors in Bos Indicus Beef Cows”, Journal of Animal Science, vol. 94, no. 11, pp. 4892 - 4902, 2016.

H. Xu, Bionaz, M., Sloboda, D. M., Ehrlich, L., Li, S., Newnham, J. P., Dudenhausen, J. W., Henrich, W., Plagemann, A., Challis, J. Rg, and Braun, T., “The dilution effect and the importance of selecting the right internal control genes for RT-qPCR: a paradigmatic approach in fetal sheep.”, BMC Res Notes, vol. 8, p. 58, 2015.

J. Pérez, Buchanan, A., Mellbye, B., Ferrell, R., Chang, J. H., Chaplen, F., Bottomley, P. J., Arp, D. J., and Sayavedra-Soto, L. A., “Interactions of Nitrosomonas europaea and Nitrobacter winogradskyi grown in co-culture.”, Arch Microbiol, vol. 197, no. 1, pp. 79-89, 2015.

J. Ding, Holzwarth, G., C Bradford, S., Cooley, B., Yoshinaga, A. S., Patton-Vogt, J., Abeliovich, H., Penner, M. H., and Bakalinsky, A. T., “PEP3 overexpression shortens lag phase but does not alter growth rate in Saccharomyces cerevisiae exposed to acetic acid stress.”, Appl Microbiol Biotechnol, vol. 99, no. 20, pp. 8667-80, 2015.

Z. Jeknić, Jeknić, S., Jevremović, S., Subotić, A., and Chen, T. H. H., “Alteration of flower color in Iris germanica L. 'Fire Bride' through ectopic expression of phytoene synthase gene (crtB) from Pantoea agglomerans.”, Plant Cell Rep, vol. 33, no. 8, pp. 1307-21, 2014.

R. F. Cooke, Cappellozza, B. Ieda, Filho, T. A. Guarnie, Depner, C. M., Lytle, K. A., Jump, D. B., Bohnert, D. W., Cerri, R. L. A., and Vasconcelos, J. L. M., “Effects of calcium salts of soybean oil on factors that influence pregnancy establishment in Bos indicus beef cows”, Journal of Animal Science, vol. 92, no. 5, pp. 2239 - 2250, 2014.

B. Ieda Cappellozza, Cooke, R. F., Reis, M. M., Moriel, P., Keisler, D. H., and Bohnert, D. W., “Supplementation based on protein or energy ingredients to beef cattle consuming low-quality cool-season forages: II. Performance, reproductive, and metabolic responses of replacement heifers”, Journal of Animal Science, vol. 92, no. 6, pp. 2725 - 2734, 2014.

D. D. Tanaree, Duringer, J. M., Bohnert, D. W., and Craig, A. M., “Microarray evaluation of bovine hepatic gene response to fescue toxicosis”, World Mycotoxin Journal, vol. 67384531273358443, no. 4, pp. 419 - 426, 2013.

S. Holt, Cordente, A. G., Williams, S. J., Capone, D. L., Jitjaroen, W., Menz, I. R., Curtin, C. D., and Anderson, P. A., “Engineering Saccharomyces cerevisiae to release 3-Mercaptohexan-1-ol during fermentation through overexpression of an S. cerevisiae Gene, STR3, for improvement of wine aroma.”, Appl Environ Microbiol, vol. 77, no. 11, pp. 3626-32, 2011.

E. Monaco, Bionaz, M., de Lima, A. Sobreira, Hurley, W. L., Loor, J. J., and Wheeler, M. B., “Selection and reliability of internal reference genes for quantitative PCR verification of transcriptomics during the differentiation process of porcine adult mesenchymal stem cells.”, Stem Cell Res Ther, vol. 1, no. 1, p. 7, 2010.

L. K. Mathew, Sengupta, S. S., LaDu, J., Andreasen, E. A., and Tanguay, R. L., “Crosstalk between AHR and Wnt signaling through R-Spondin1 impairs tissue regeneration in zebrafish.”, FASEB J, vol. 22, no. 8, pp. 3087-96, 2008.

N. Joo Kang, Lee, K. Won, Kwon, J. Yeon, Hwang, M. Kyung, Rogozin, E. A., Heo, Y. - S., Bode, A. M., Lee, H. Joo, and Dong, Z., “Delphinidin attenuates neoplastic transformation in JB6 Cl41 mouse epidermal cells by blocking Raf/mitogen-activated protein kinase kinase/extracellular signal-regulated kinase signaling.”, Cancer Prev Res (Phila), vol. 1, no. 7, pp. 522-31, 2008.

M. - T. Pino, Skinner, J. S., Jeknić, Z., Hayes, P. M., Soeldner, A. H., Thomashow, M. F., and Chen, T. H. H., “Ectopic AtCBF1 over-expression enhances freezing tolerance and induces cold acclimation-associated physiological modifications in potato.”, Plant Cell Environ, vol. 31, no. 4, pp. 393-406, 2008.

C. J. Funatake, Marshall, N. B., Steppan, L. B., Mourich, D. V., and Kerkvliet, N. I., “Cutting edge: activation of the aryl hydrocarbon receptor by 2,3,7,8-tetrachlorodibenzo-p-dioxin generates a population of CD4+ CD25+ cells with characteristics of regulatory T cells.”, J Immunol, vol. 175, no. 7, pp. 4184-8, 2005.

E. Mullen, Brown, R. M., Osborne, T. F., and Shay, N. F., “Soy isoflavones affect sterol regulatory element binding proteins (SREBPs) and SREBP-regulated genes in HepG2 cells.”, J Nutr, vol. 134, no. 11, pp. 2942-7, 2004.

C. E. Roselli, Larkin, K., Resko, J. A., Stellflug, J. N., and Stormshak, F., “The volume of a sexually dimorphic nucleus in the ovine medial preoptic area/anterior hypothalamus varies with sexual partner preference.”, Endocrinology, vol. 145, no. 2, pp. 478-83, 2004.

Z. Cao, Tanguay, R. L., McKenzie, D., Peterson, R. E., and Aiken, J. M., “Identification of a putative calcium-binding protein as a dioxin-responsive gene in zebrafish and rainbow trout.”, Aquat Toxicol, vol. 63, no. 3, pp. 271-82, 2003.

R. L. Tanguay and Gallie, D. R., “The effect of the length of the 3'-untranslated region on expression in plants.”, FEBS Lett, vol. 394, no. 3, pp. 285-8, 1996.

R. L. Tanguay and Gallie, D. R., “Translational efficiency is regulated by the length of the 3' untranslated region.”, Mol Cell Biol, vol. 16, no. 1, pp. 146-56, 1996.