College of Agricultural Sciences

S. Naithani, Preece, J., D’Eustachio, P., Gupta, P., Amarasinghe, V., Dharmawardhana, P. D., Wu, G., Fabregat, A., Elser, J. L., Weiser, J., Keays, M., Fuentes, A. Munoz- Pome, Petryszak, R., Stein, L. D., Ware, D., and Jaiswal, P., “Plant Reactome: a resource for plant pathways and comparative analysis.”, Nucleic acids research, vol. 45, pp. D1029-D1039, 2018.

E. F. O'Donnell, Jang, H. Sang, Pearce, M. C., Kerkvliet, N. I., and Kolluri, S., “The aryl hydrocarbon receptor is required for induction of p21cip1/waf1 expression and growth inhibition by SU5416 in hepatoma cells.”, Oncotarget, vol. 8, no. 15, pp. 25211-25225, 2017.

S. Naithani and Jaiswal, P., “Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study.”, Methods in molecular biology (Clifton, N.J.), vol. 1533, pp. 241-256, 2017.

S. Dagdeviren, Jung, D. Young, Lee, E., Friedline, R. H., Noh, H. Lim, Kim, J. Hun, Patel, P. R., Tsitsilianos, N., Tsitsilianos, A. V., Tran, D. A., Tsougranis, G. H., Kearns, C. C., Uong, C. P., Kwon, J. Yeon, Muller, W., Lee, K. Won, and Kim, J. K., “Altered Interleukin-10 Signaling in Skeletal Muscle Regulates Obesity-Mediated Inflammation and Insulin Resistance.”, Mol Cell Biol, vol. 36, no. 23, pp. 2956-2966, 2016.

M. Bionaz, Monaco, E., and Wheeler, M. B., “Transcription Adaptation during In Vitro Adipogenesis and Osteogenesis of Porcine Mesenchymal Stem Cells: Dynamics of Pathways, Biological Processes, Up-Stream Regulators, and Gene Networks.”, PLoS One, vol. 10, no. 9, p. e0137644, 2015.

S. M. Bugel, Bonventre, J. A., White, L. A., Tanguay, R. L., and Cooper, K. R., “Chronic exposure of killifish to a highly polluted environment desensitizes estrogen-responsive reproductive and biomarker genes.”, Aquat Toxicol, vol. 152, pp. 222-31, 2014.

E. F. O'Donnell, Kopparapu, P. Rao, Koch, D. C., Jang, H. Sang, Phillips, J. Lynne, Tanguay, R. L., Kerkvliet, N. I., and Kolluri, S. Kumar, “The aryl hydrocarbon receptor mediates leflunomide-induced growth inhibition of melanoma cells.”, PLoS One, vol. 7, no. 7, p. e40926, 2012.

M. Bionaz, Thering, B. J., and Loor, J. J., “Fine metabolic regulation in ruminants via nutrient-gene interactions: saturated long-chain fatty acids increase expression of genes involved in lipid metabolism and immune response partly through PPAR-α activation.”, Br J Nutr, vol. 107, no. 2, pp. 179-91, 2012.

J. Yeon Kwon, Seo, S. Gwon, Yue, S., Cheng, J. - X., Lee, K. Won, and Kim, K. - H., “An inhibitory effect of resveratrol in the mitotic clonal expansion and insulin signaling pathway in the early phase of adipogenesis.”, Nutr Res, vol. 32, no. 8, pp. 607-16, 2012.

J. Yeon Kwon, Seo, S. Gwon, Heo, Y. - S., Yue, S., Cheng, J. - X., Lee, K. Won, and Kim, K. - H., “Piceatannol, natural polyphenolic stilbene, inhibits adipogenesis via modulation of mitotic clonal expansion and insulin receptor-dependent insulin signaling in early phase of differentiation.”, J Biol Chem, vol. 287, no. 14, pp. 11566-78, 2012.

E. Monaco, Bionaz, M., Rodriguez-Zas, S., Hurley, W. L., and Wheeler, M. B., “Transcriptomics comparison between porcine adipose and bone marrow mesenchymal stem cells during in vitro osteogenic and adipogenic differentiation.”, PLoS One, vol. 7, no. 3, p. e32481, 2012.

T. - G. Lim, Lee, B. Kyung, Kwon, J. Yeon, Jung, S. Keun, and Lee, K. Won, “Acrylamide up-regulates cyclooxygenase-2 expression through the MEK/ERK signaling pathway in mouse epidermal cells.”, Food Chem Toxicol, vol. 49, no. 6, pp. 1249-54, 2011.

J. - E. Kim, Kwon, J. Yeon, Seo, S. Kwon, Son, J. Eun, Jung, S. Keun, Min, S. Yun, Hwang, M. Kyung, Heo, Y. - S., Lee, K. Won, and Lee, H. Joo, “Cyanidin suppresses ultraviolet B-induced COX-2 expression in epidermal cells by targeting MKK4, MEK1, and Raf-1.”, Biochem Pharmacol, vol. 79, no. 10, pp. 1473-82, 2010.

T. L. Tal, Franzosa, J. A., and Tanguay, R. L., “Molecular signaling networks that choreograph epimorphic fin regeneration in zebrafish - a mini-review.”, Gerontology, vol. 56, no. 2, pp. 231-40, 2010.

L. K. Mathew, Simonich, M. T., and Tanguay, R. L., “AHR-dependent misregulation of Wnt signaling disrupts tissue regeneration.”, Biochem Pharmacol, vol. 77, no. 4, pp. 498-507, 2009.

L. K. Mathew, Sengupta, S., Franzosa, J. A., Perry, J., La Du, J., Andreasen, E. A., and Tanguay, R. L., “Comparative expression profiling reveals an essential role for raldh2 in epimorphic regeneration.”, J Biol Chem, vol. 284, no. 48, pp. 33642-53, 2009.

K. M. Moyes, Drackley, J. K., Morin, D. E., Bionaz, M., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., and Loor, J. J., “Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPARgamma signaling..”, BMC Genomics, vol. 10, p. 542, 2009.

R. L. Tanguay and Reimers, M. J., “Analysis of ethanol developmental toxicity in zebrafish.”, Methods Mol Biol, vol. 447, pp. 63-74, 2008.

F. Stormshak and Bishop, C., “Board-invited review: Estrogen and progesterone signaling: genomic and nongenomic actions in domestic ruminants.”, J Anim Sci, vol. 86, no. 2, pp. 299-315, 2008.

N. Joo Kang, Lee, K. Won, Kwon, J. Yeon, Hwang, M. Kyung, Rogozin, E. A., Heo, Y. - S., Bode, A. M., Lee, H. Joo, and Dong, Z., “Delphinidin attenuates neoplastic transformation in JB6 Cl41 mouse epidermal cells by blocking Raf/mitogen-activated protein kinase kinase/extracellular signal-regulated kinase signaling.”, Cancer Prev Res (Phila), vol. 1, no. 7, pp. 522-31, 2008.

C. Bishop and Stormshak, F., “Non-genomic actions of progesterone and estrogens in regulating reproductive events in domestic animals.”, Vet J, vol. 176, no. 3, pp. 270-80, 2008.

B. R. Evans, Karchner, S. I., Allan, L. L., Pollenz, R. S., Tanguay, R. L., Jenny, M. J., Sherr, D. H., and Hahn, M. E., “Repression of aryl hydrocarbon receptor (AHR) signaling by AHR repressor: role of DNA binding and competition for AHR nuclear translocator.”, Mol Pharmacol, vol. 73, no. 2, pp. 387-98, 2008.

I. Orhanovic, Crinon, R. J., Chaplen, F. W. R., and Weisshaar, A., “Signal transduction pathway modeling using sequences of chromatophore images.”, IEEE Trans Nanobioscience, vol. 6, no. 3, pp. 210-8, 2007.

L. K. Mathew, Sengupta, S., Kawakami, A., Andreasen, E. A., Löhr, C. V., Loynes, C. A., Renshaw, S. A., Peterson, R. T., and Tanguay, R. L., “Unraveling tissue regeneration pathways using chemical genetics.”, J Biol Chem, vol. 282, no. 48, pp. 35202-10, 2007.

C. Benedict, Skinner, J. S., Meng, R., Chang, Y., Bhalerao, R., Huner, N. P. A., Finn, C. E., Chen, T. H. H., and Hurry, V., “The CBF1-dependent low temperature signalling pathway, regulon and increase in freeze tolerance are conserved in Populus spp.”, Plant Cell Environ, vol. 29, no. 7, pp. 1259-72, 2006.