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Biblio
Found 12 results
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Ware, Doreen
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Journal Article
J. Ni
,
Pujar, A.
,
Youens-Clark, K.
,
Yap, I.
,
Jaiswal, P.
,
Tecle, I.
,
Tung, C. - W.
,
Ren, L.
,
Spooner, W.
,
Wei, X.
,
Avraham, S.
,
Ware, D.
,
Stein, L.
, and
McCouch, S.
,
“
Gramene QTL database: development, content and applications.
”
,
Database : the journal of biological databases and curation
, vol. 2009, p. bap005, 2009.
P. Jaiswal
,
Ware, D.
,
Ni, J.
,
Chang, K.
,
Zhao, W.
,
Schmidt, S.
,
Pan, X.
,
Clark, K.
,
Teytelman, L.
,
Cartinhour, S.
,
Stein, L.
, and
McCouch, S.
,
“
Gramene: development and integration of trait and gene ontologies for rice.
”
,
Comparative and functional genomics
, vol. 3, pp. 132-6, 2002.
P. Gupta
,
Naithani, S.
,
Tello-Ruiz, M. Karey
,
Chougule, K.
,
D’Eustachio, P.
,
Fabregat, A.
,
Jiao, Y.
,
Keays, M.
,
Lee, Y. Koung
,
Kumari, S.
,
Mulvaney, J.
,
Olson, A.
,
Preece, J.
,
Stein, J.
,
Wei, S.
,
Weiser, J.
,
Huerta, L.
,
Petryszak, R.
,
Kersey, P.
,
Stein, L. D.
,
Ware, D.
, and
Jaiswal, P.
,
“
Gramene Database: Navigating Plant Comparative Genomics Resources.
”
,
Current plant biology
, vol. 7-8, pp. 10-15, 2016.
K. Youens-Clark
,
Buckler, E.
,
Casstevens, T.
,
Chen, C.
,
Declerck, G.
,
Derwent, P.
,
Dharmawardhana, P.
,
Jaiswal, P.
,
Kersey, P.
,
Karthikeyan, A. S.
,
Lu, J.
,
McCouch, S. R.
,
Ren, L.
,
Spooner, W.
,
Stein, J. C.
,
Thomason, J.
,
Wei, S.
, and
Ware, D.
,
“
Gramene database in 2010: updates and extensions.
”
,
Nucleic acids research
, vol. 39, pp. D1085-94, 2011.
D. Ware
,
Jaiswal, P.
,
Ni, J.
,
Pan, X.
,
Chang, K.
,
Clark, K.
,
Teytelman, L.
,
Schmidt, S.
,
Zhao, W.
,
Cartinhour, S.
,
McCouch, S.
, and
Stein, L.
,
“
Gramene: a resource for comparative grass genomics.
”
,
Nucleic acids research
, vol. 30, pp. 103-5, 2002.
C. Liang
,
Jaiswal, P.
,
Hebbard, C.
,
Avraham, S.
,
Buckler, E. S.
,
Casstevens, T.
,
Hurwitz, B.
,
McCouch, S.
,
Ni, J.
,
Pujar, A.
,
Ravenscroft, D.
,
Ren, L.
,
Spooner, W.
,
Tecle, I.
,
Thomason, J.
,
Tung, C. - W.
,
Wei, X.
,
Yap, I.
,
Youens-Clark, K.
,
Ware, D.
, and
Stein, L.
,
“
Gramene: a growing plant comparative genomics resource.
”
,
Nucleic acids research
, vol. 36, pp. D947-53, 2008.
P. Jaiswal
,
Ni, J.
,
Yap, I.
,
Ware, D.
,
Spooner, W.
,
Youens-Clark, K.
,
Ren, L.
,
Liang, C.
,
Zhao, W.
,
Ratnapu, K.
,
Faga, B.
,
Canaran, P.
,
Fogleman, M.
,
Hebbard, C.
,
Avraham, S.
,
Schmidt, S.
,
Casstevens, T. M.
,
Buckler, E. S.
,
Stein, L.
, and
McCouch, S.
,
“
Gramene: a bird’s eye view of cereal genomes.
”
,
Nucleic acids research
, vol. 34, pp. D717-23, 2006.
M. K. Tello-Ruiz
,
Naithani, S.
,
Stein, J. C.
,
Gupta, P.
,
Campbell, M.
,
Olson, A.
,
Wei, S.
,
Preece, J.
,
Geniza, M. J.
,
Jiao, Y.
,
Lee, Y. Koung
,
Wang, B.
,
Mulvaney, J.
,
Chougule, K.
,
Elser, J.
,
Al-Bader, N.
,
Kumari, S.
,
Thomason, J.
,
Kumar, V.
,
Bolser, D. M.
,
Naamati, G.
,
Tapanari, E.
,
Fonseca, N.
,
Huerta, L.
,
Iqbal, H.
,
Keays, M.
,
Fuentes, A. Munoz- Pome
,
Tang, A.
,
Fabregat, A.
,
D’Eustachio, P.
,
Weiser, J.
,
Stein, L. D.
,
Petryszak, R.
,
Papatheodorou, I.
,
Kersey, P. J.
,
Lockhart, P.
,
Taylor, C.
,
Jaiswal, P.
, and
Ware, D.
,
“
Gramene 2018: unifying comparative genomics and pathway resources for plant research.
”
,
Nucleic acids research
, vol. 46, pp. D1181-D1189, 2018.
M. K. Tello-Ruiz
,
Stein, J.
,
Wei, S.
,
Preece, J.
,
Olson, A.
,
Naithani, S.
,
Amarasinghe, V.
,
Dharmawardhana, P.
,
Jiao, Y.
,
Mulvaney, J.
,
Kumari, S.
,
Chougule, K.
,
Elser, J.
,
Wang, B.
,
Thomason, J.
,
Bolser, D. M.
,
Kerhornou, A.
,
Walts, B.
,
Fonseca, N. A.
,
Huerta, L.
,
Keays, M.
,
Y Tang, A.
,
Parkinson, H.
,
Fabregat, A.
,
McKay, S.
,
Weiser, J.
,
D’Eustachio, P.
,
Stein, L.
,
Petryszak, R.
,
Kersey, P. J.
,
Jaiswal, P.
, and
Ware, D.
,
“
Gramene 2016: comparative plant genomics and pathway resources.
”
,
Nucleic acids research
, vol. 44, pp. D1133-40, 2016.
M. K. Monaco
,
Stein, J.
,
Naithani, S.
,
Wei, S.
,
Dharmawardhana, P.
,
Kumari, S.
,
Amarasinghe, V.
,
Youens-Clark, K.
,
Thomason, J.
,
Preece, J.
,
Pasternak, S.
,
Olson, A.
,
Jiao, Y.
,
Lu, Z.
,
Bolser, D.
,
Kerhornou, A.
,
Staines, D.
,
Walts, B.
,
Wu, G.
,
D’Eustachio, P.
,
Haw, R.
,
Croft, D.
,
Kersey, P. J.
,
Stein, L.
,
Jaiswal, P.
, and
Ware, D.
,
“
Gramene 2013: comparative plant genomics resources.
”
,
Nucleic acids research
, vol. 42, pp. D1193-9, 2014.
P. Dharmawardhana
,
Ren, L.
,
Amarasinghe, V.
,
Monaco, M.
,
Thomason, J.
,
Ravenscroft, D.
,
McCouch, S.
,
Ware, D.
, and
Jaiswal, P.
,
“
A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress
”
,
Rice
, vol. 6, 2013.
Book Chapter
M. Karey Tello-Ruiz
,
Stein, J.
,
Wei, S.
,
Youens-Clark, K.
,
Jaiswal, P.
, and
Ware, D.
,
“
Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways.
”
, in
Methods in molecular biology (Clifton, N.J.)
, vol. 1374, 2016, pp. 141-63.