Found 12 results
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Journal Article
J. Ni, Pujar, A., Youens-Clark, K., Yap, I., Jaiswal, P., Tecle, I., Tung, C. - W., Ren, L., Spooner, W., Wei, X., Avraham, S., Ware, D., Stein, L., and McCouch, S., “Gramene QTL database: development, content and applications.”, Database : the journal of biological databases and curation, vol. 2009, p. bap005, 2009.
P. Jaiswal, Ware, D., Ni, J., Chang, K., Zhao, W., Schmidt, S., Pan, X., Clark, K., Teytelman, L., Cartinhour, S., Stein, L., and McCouch, S., “Gramene: development and integration of trait and gene ontologies for rice.”, Comparative and functional genomics, vol. 3, pp. 132-6, 2002.
P. Gupta, Naithani, S., Tello-Ruiz, M. Karey, Chougule, K., D’Eustachio, P., Fabregat, A., Jiao, Y., Keays, M., Lee, Y. Koung, Kumari, S., Mulvaney, J., Olson, A., Preece, J., Stein, J., Wei, S., Weiser, J., Huerta, L., Petryszak, R., Kersey, P., Stein, L. D., Ware, D., and Jaiswal, P., “Gramene Database: Navigating Plant Comparative Genomics Resources.”, Current plant biology, vol. 7-8, pp. 10-15, 2016.
K. Youens-Clark, Buckler, E., Casstevens, T., Chen, C., Declerck, G., Derwent, P., Dharmawardhana, P., Jaiswal, P., Kersey, P., Karthikeyan, A. S., Lu, J., McCouch, S. R., Ren, L., Spooner, W., Stein, J. C., Thomason, J., Wei, S., and Ware, D., “Gramene database in 2010: updates and extensions.”, Nucleic acids research, vol. 39, pp. D1085-94, 2011.
D. Ware, Jaiswal, P., Ni, J., Pan, X., Chang, K., Clark, K., Teytelman, L., Schmidt, S., Zhao, W., Cartinhour, S., McCouch, S., and Stein, L., “Gramene: a resource for comparative grass genomics.”, Nucleic acids research, vol. 30, pp. 103-5, 2002.
C. Liang, Jaiswal, P., Hebbard, C., Avraham, S., Buckler, E. S., Casstevens, T., Hurwitz, B., McCouch, S., Ni, J., Pujar, A., Ravenscroft, D., Ren, L., Spooner, W., Tecle, I., Thomason, J., Tung, C. - W., Wei, X., Yap, I., Youens-Clark, K., Ware, D., and Stein, L., “Gramene: a growing plant comparative genomics resource.”, Nucleic acids research, vol. 36, pp. D947-53, 2008.
P. Jaiswal, Ni, J., Yap, I., Ware, D., Spooner, W., Youens-Clark, K., Ren, L., Liang, C., Zhao, W., Ratnapu, K., Faga, B., Canaran, P., Fogleman, M., Hebbard, C., Avraham, S., Schmidt, S., Casstevens, T. M., Buckler, E. S., Stein, L., and McCouch, S., “Gramene: a bird’s eye view of cereal genomes.”, Nucleic acids research, vol. 34, pp. D717-23, 2006.
M. K. Tello-Ruiz, Naithani, S., Stein, J. C., Gupta, P., Campbell, M., Olson, A., Wei, S., Preece, J., Geniza, M. J., Jiao, Y., Lee, Y. Koung, Wang, B., Mulvaney, J., Chougule, K., Elser, J., Al-Bader, N., Kumari, S., Thomason, J., Kumar, V., Bolser, D. M., Naamati, G., Tapanari, E., Fonseca, N., Huerta, L., Iqbal, H., Keays, M., Fuentes, A. Munoz- Pome, Tang, A., Fabregat, A., D’Eustachio, P., Weiser, J., Stein, L. D., Petryszak, R., Papatheodorou, I., Kersey, P. J., Lockhart, P., Taylor, C., Jaiswal, P., and Ware, D., “Gramene 2018: unifying comparative genomics and pathway resources for plant research.”, Nucleic acids research, vol. 46, pp. D1181-D1189, 2018.
M. K. Tello-Ruiz, Stein, J., Wei, S., Preece, J., Olson, A., Naithani, S., Amarasinghe, V., Dharmawardhana, P., Jiao, Y., Mulvaney, J., Kumari, S., Chougule, K., Elser, J., Wang, B., Thomason, J., Bolser, D. M., Kerhornou, A., Walts, B., Fonseca, N. A., Huerta, L., Keays, M., Y Tang, A., Parkinson, H., Fabregat, A., McKay, S., Weiser, J., D’Eustachio, P., Stein, L., Petryszak, R., Kersey, P. J., Jaiswal, P., and Ware, D., “Gramene 2016: comparative plant genomics and pathway resources.”, Nucleic acids research, vol. 44, pp. D1133-40, 2016.
M. K. Monaco, Stein, J., Naithani, S., Wei, S., Dharmawardhana, P., Kumari, S., Amarasinghe, V., Youens-Clark, K., Thomason, J., Preece, J., Pasternak, S., Olson, A., Jiao, Y., Lu, Z., Bolser, D., Kerhornou, A., Staines, D., Walts, B., Wu, G., D’Eustachio, P., Haw, R., Croft, D., Kersey, P. J., Stein, L., Jaiswal, P., and Ware, D., “Gramene 2013: comparative plant genomics resources.”, Nucleic acids research, vol. 42, pp. D1193-9, 2014.
P. Dharmawardhana, Ren, L., Amarasinghe, V., Monaco, M., Thomason, J., Ravenscroft, D., McCouch, S., Ware, D., and Jaiswal, P., “A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress”, Rice, vol. 6, 2013.
Book Chapter
M. Karey Tello-Ruiz, Stein, J., Wei, S., Youens-Clark, K., Jaiswal, P., and Ware, D., “Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways.”, in Methods in molecular biology (Clifton, N.J.), vol. 1374, 2016, pp. 141-63.